I have really limited experience, but maybe I can help a bit...
I'll notice in designer that sometimes pieces will visually have splits in them and the paper will have numbers to glue them together. Should I leave those split?)?
I'm not quite sure what you're talking about here, but when you print out all the pieces, you're supposed to cut all the solid lines and score all the dotted lines. Usually if there are numbers, it means you need to glue that edge to another one, so I guess cut them apart?
...I also notice that sometimes when gluing two pieces together, one set of numbers will line up but the next won't. Then in turn leads to other numbers not lining up correctly down the road. Should I just roll with it and try to make it look picture perfect as possible in this situation (ignore the pieces that don't align)?
I had the same issue, I was able to resolve it for the most part by "dry fitting" my pieces first to see if there were any problems before gluing it together. Basically just line up the piece that you're going to glue down without putting any glue on, then fold it as best you can to your existing piece and see if there are any obvious alignment issues. If they're not lining up properly, try gluing the center of the new piece down and work toward the ends, or start at an area where alignment REALLY matters, like corners. If all else fails, start from the center and fill the "holes" with extra pieces of cardstock.
What really helps to prevent that in the first place, though, is making sure that your cutting is really straight and consistent, and that your scoring is dead on straight. Use a metal ruler to help get the straightest lines possible!!
How do you all go about gluing them? Do you start from number 1 and go from there? Do you just pick a point and do the whole thing at once? Do you just do it in parts and bring them all together at the end?
I've only made one thing, a helmet, but I had to build it several times (scaling issues, ugh), and as I went along I found it easiest to work from the top center to the bottom edges, working evenly on both sides. But I guess how you work on it depends on how the file is laid out. Some builds seem like they have a lot of "rings" while others have more "lines" if you get what I mean. That being said, I don't think there's any WRONG order to build in, so don't worry too much.
I cannot figure out what is causing the warping. I hope I didn't miss a thread on it but I've tried to search here, youtube vids, and on google but all I find is people having warping issues when it comes to using the resin or glue causing warping. But I've tried white glue, hot glue, super glue, and spray glue and still get the warping. So I don't think the glue is the problem.
If you're having trouble with warping while building, before you resin, it's probably because of your alignment issues.. just be really careful about your cutting and dry fit everything before you glue it.
Hope that helps a bit...